PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6TYS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	92.3	H1	13	H1-13-1	11	AASGFTFSSYDMS	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	80.0	H2	10	H2-10-2	7	MISSGGSYSY	BBBAALABBB
C	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H3	11	H3-11-*	-1	ARQGDYAWFAY	BBBBABABBAB
C	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L1	11	L1-11-1	7	LASQTIGTWLA	BBABBAEABBB
D	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L2	8	L2-8-1	10	YAATSLAD	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	85.7	L3	9	L3-9-cis7-1	10	QQFYSTPFT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L4	6	L4-6-1	14	GSGTKF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	92.3	H1	13	H1-13-1	11	AASGFTFSSYDMS	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	80.0	H2	10	H2-10-2	7	MISSGGSYSY	BBBAALABBB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H3	11	H3-11-*	-1	ARQGDYAWFAY	BBBBABABBAB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L1	11	L1-11-1	7	LASQTIGTWLA	BBABBAEABBB
G	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L2	8	L2-8-1	10	YAATSLAD	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	85.7	L3	9	L3-9-cis7-1	10	QQFYSTPFT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L4	6	L4-6-1	14	GSGTKF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	92.3	H1	13	H1-13-1	11	AASGFTFSSYDMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	80.0	H2	10	H2-10-2	7	MISSGGSYSY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H3	11	H3-11-*	-1	ARQGDYAWFAY	BBBBABABBAB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	100.0	Mo_IGHV5-9-3*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L1	11	L1-11-1	7	LASQTIGTWLA	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L2	8	L2-8-1	10	YAATSLAD	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	85.7	L3	9	L3-9-cis7-1	10	QQFYSTPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV12-98*01	100.0	Mo_IGKV12-98*01	100.0	L4	6	L4-6-1	14	GSGTKF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022