PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6TNP

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	94.1	L1	17	L1-17-1	13	KSSQSLlnsgdqKNYLT	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	87.5	L2	8	L2-8-1	7	FWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	23	QNDYSYPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	100.0	H1	13	H1-13-1	14	KASGYTFTDHAIH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	70.0	H2	10	H2-10-*	-1	HFSPGNTDIK	BBBBEBBBBB
B	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	50.0	H3	9	H3-9-*	-1	KTSTFFFDY	BBEBLABBB
B	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	75.0	H4	8	H4-8-1	10	VDRSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	94.1	L1	17	L1-17-1	12	KSSQSLlnsgdqKNYLT	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	87.5	L2	8	L2-8-1	7	FWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	23	QNDYSYPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	100.0	H1	13	H1-13-1	14	KASGYTFTDHAIH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	70.0	H2	10	H2-10-1	26	HFSPGNTDIK	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	50.0	H3	9	H3-9-*	-1	KTSTFFFDY	BBEBLABBB
D	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	75.0	H4	8	H4-8-1	10	VDRSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	94.1	L1	17	L1-17-1	12	KSSQSLlnsgdqKNYLT	BBABBABBAAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	87.5	L2	8	L2-8-1	7	FWASTRES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	23	QNDYSYPLT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	100.0	H1	13	H1-13-1	14	KASGYTFTDHAIH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	70.0	H2	10	H2-10-*	-1	HFSPGNTDIK	BBBBLBBBBB
F	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	50.0	H3	9	H3-9-*	-1	KTSTFFFDY	BBEAAABBB
F	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	75.0	H4	8	H4-8-1	10	VDRSSSTA	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	94.1	L1	17	L1-17-*	-1	KSSQSLlnsgdqKNYLT	BBABBABBAAALBALBB
G	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	87.5	L2	8	L2-8-4	14	FWASTRES	BEAABBBB
G	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	23	QNDYSYPLT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	100.0	H1	13	H1-13-1	14	KASGYTFTDHAIH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	70.0	H2	10	H2-10-*	-1	HFSPGNTDIK	BBBAAAEEBB
H	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	50.0	H3	9	H3-9-*	-1	KTSTFFFDY	BBEBLABBB
H	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	75.0	H4	8	H4-8-1	10	VDRSSSTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	100.0	H1	13	H1-13-1	14	KASGYTFTDHAIH	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	70.0	H2	10	H2-10-*	-1	HFspgntdIK
I	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	50.0	H3	9	H3-9-*	-1	KTSTFFFDY	BBEAAABBB
I	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	75.0	H4	8	H4-8-1	10	VDRSSSTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	94.1	L1	17	L1-17-1	12	KSSQSLlnsgdqKNYLT	BBABBABBAAALBBBBB
J	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	87.5	L2	8	L2-8-1	8	FWASTRES	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	23	QNDYSYPLT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
K	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	100.0	H1	13	H1-13-*	-1	KASGYTFTDhAIH
K	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	70.0	H2	10	H2-10-*	-1	Hfspgntdik
K	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	50.0	H3	9	H3-9-*	-1	KTStfffDY
K	heavy	Mus.musculus	Mo_IGHV1S53*01	94.5	Mo_IGHV1S53*01	75.0	H4	8	H4-8-1	10	VDRSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	94.1	L1	17	L1-17-1	13	KSSQSLlnsgdqKNYLT	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	87.5	L2	8	L2-8-1	7	FWASTRES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	23	QNDYSYPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV8-19*01	97.1	Mo_IGKV8-19*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022