PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6SNE

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	72.7	L1	11	L1-11-2	12	RASQSVTKYLN	BBABBALLBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	12	YGTYTLLS	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	71.4	L3	9	L3-9-2	11	QQAHSTPWT	BBAABABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	50.0	L4	6	L4-6-1	14	GSGSLY	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	53.3	H1	15	H1-15-*	-1	RVSGDSVSndNYYWA	BBAABBAABAABBBB
B	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	77.8	H2	9	H2-9-1	12	TIYYSGTTY	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	0.0	H3	20	H3-20-*	-1	VRMpshgfwSTSFSYWYFDL
B	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	50.0	H4	8	H4-8-1	13	LDKSVNVV	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	72.7	L1	11	L1-11-2	12	RASQSVTKYLN	BBABBALLBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	12	YGTYTLLS	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	71.4	L3	9	L3-9-2	11	QQAHSTPWT	BBAABABBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	50.0	L4	6	L4-6-1	14	GSGSLY	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	53.3	H1	15	H1-15-*	-1	RVSGDSVSndNYYWA	BBAABBAABAABBBB
D	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	77.8	H2	9	H2-9-1	12	TIYYSGTTY	BBBAALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	0.0	H3	20	H3-20-*	-1	VRMpshgfwSTSFSYWYFDL
D	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	50.0	H4	8	H4-8-1	13	LDKSVNVV	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	72.7	L1	11	L1-11-2	12	RASQSVTKYLN	BBABBALLBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	12	YGTYTLLS	BLEABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	71.4	L3	9	L3-9-2	11	QQAHSTPWT	BBAABABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	50.0	L4	6	L4-6-1	14	GSGSLY	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	53.3	H1	15	H1-15-*	-1	RVSGDSVSndNYYWA	BBAABBAABAABBBB
F	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	77.8	H2	9	H2-9-1	12	TIYYSGTTY	BBBAALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	0.0	H3	20	H3-20-*	-1	VRMpshgfwSTSFSYWYFDL
F	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	50.0	H4	8	H4-8-1	13	LDKSVNVV	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	53.3	H1	15	H1-15-*	-1	RVSGDSVSndNYYWA	BBAABBAABAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	77.8	H2	9	H2-9-1	12	TIYYSGTTY	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	0.0	H3	20	H3-20-*	-1	VRMpshgfwSTSFSYWYFDL
H	heavy	Homo.sapiens	Hu_IGHV4-31*09	72.2	Hu_IGHV4-31*09	50.0	H4	8	H4-8-1	13	LDKSVNVV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	72.7	L1	11	L1-11-2	12	RASQSVTKYLN	BBABBALLBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	12	YGTYTLLS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	71.4	L3	9	L3-9-2	11	QQAHSTPWT	BBAABABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	78.3	Hu_IGKV1-39*01	50.0	L4	6	L4-6-1	14	GSGSLY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022