PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6S3D

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	46.2	H1	13	H1-13-*	-1	QASGGPLRNYIIN	ALBABBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	14	GIIPVLGTVH	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvstTYLPHYFDN
A	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	13	ADESTDTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	5	QASQDIVNYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	9	YVASNLET	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	7	QQYDNlPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	25	QASGGPLRNYIIN	BBBEBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	70.0	H2	10	H2-10-*	-1	GIIPVLGTVH	BBBAABABBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvstTYLPHYFDN
C	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	13	ADESTDTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	9	YVASNLET	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	7	QQYDNlPLT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	46.2	H1	13	H1-13-*	-1	QASGGPLRNYIIN	BBBEBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	14	GIIPVLGTVH	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvstTYLPHYFDN
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	13	ADESTDTA	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	9	YVASNLET	BLEABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	6	QQYDNlPLT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	46.2	H1	13	H1-13-*	-1	QASGGPLRNYIIN	BALABBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	14	GIIPVLGTVH	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvstTYLPHYFDN
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	86.3	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	13	ADESTDTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	5	QASQDIVNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	9	YVASNLET	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	7	QQYDNlPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022