PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6RPS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	76.9	H1	13	H1-13-1	15	TVSGFSLTTYSVS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	66.7	H2	9	H2-9-1	17	RMWYDGDTV	BBBAALBBB
H	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	100.0	H3	15	H3-15-*	-1	TRDFGYfDGSSPFDY
H	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	100.0	H4	8	H4-8-1	6	RDTSKNQV	BBAAALBB
L	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	100.0	L1	11	L1-11-1	7	RASQGISTSIH	BBABBAEABBB
L	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	87.5	L2	8	L2-8-1	13	KFASQSIS	BLEABBBB
L	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	85.7	L3	9	L3-9-cis7-1	6	QQTYSLPYT	BBAABBbBB
L	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	100.0	L1	11	L1-11-1	7	RASQGISTSIH	BBABBAEABBB
M	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	87.5	L2	8	L2-8-1	13	KFASQSIS	BLLABBBB
M	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	85.7	L3	9	L3-9-cis7-1	6	QQTYSLPYT	BBAABBbBB
M	kappa	Homo.sapiens	Ra_IGKV5S2*01	98.6	Ra_IGKV5S2*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
N	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	76.9	H1	13	H1-13-1	15	TVSGFSLTTYSVS	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	66.7	H2	9	H2-9-1	17	RMWYDGDTV	BBBAALBBB
N	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	100.0	H3	15	H3-15-*	-1	TRDFGYfDGSSPFDY
N	heavy	Homo.sapiens	Ra_IGHV2-63*01	93.2	Ra_IGHV2-63*01	100.0	H4	8	H4-8-1	6	RDTSKNQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022