PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6RLO

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	92.3	H1	13	H1-13-1	13	AASGFTFDDYAMY	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	90.0	H2	10	H2-10-2	12	GISWNSGSIV	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	66.7	H3	13	H3-13-*	-1	AKAVSGYFPYFDY	BBBBBEABABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	94.1	L1	17	L1-17-1	8	KSSQSVlyssnnKNYLG	BBABBABBAAALBBBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	24	QQYYTTPST	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	92.3	H1	13	H1-13-1	13	AASGFTFDDYAMY	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	90.0	H2	10	H2-10-2	12	GISWNSGSIV	BBBAALABBB
C	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	66.7	H3	13	H3-13-*	-1	AKAVSGYFPYFDY	BBBBBEABABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	94.1	L1	17	L1-17-1	8	KSSQSVlyssnnKNYLG	BBABBABBAAALBBBBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	24	QQYYTTPST	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	92.3	H1	13	H1-13-1	13	AASGFTFDDYAMY	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	90.0	H2	10	H2-10-2	12	GISWNSGSIV	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	66.7	H3	13	H3-13-*	-1	AKAVSGYFPYFDY	BBBBBEABABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	94.1	L1	17	L1-17-1	8	KSSQSVlyssnnKNYLG	BBABBABBAAALBBBBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	24	QQYYTTPST	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	92.3	H1	13	H1-13-1	13	AASGFTFDDYAMY	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	90.0	H2	10	H2-10-2	12	GISWNSGSIV	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	66.7	H3	13	H3-13-*	-1	AKAVSGYFPYFDY	BBBBBEABABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-9*01	95.9	Hu_IGHV3-9*01	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	94.1	L1	17	L1-17-1	8	KSSQSVlyssnnKNYLG	BBABBABBAAALBBBBB
H	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	24	QQYYTTPST	BBAABBbBB
H	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022