PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6QNK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L1	16	L1-16-1	7	RSSKSLlhsngNTYLY	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	6	YRMSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L3	9	L3-9-cis7-1	5	MQHLEYPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	13	GSGTAF	EBAABB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	84.6	H1	13	H1-13-1	8	SASGFAFSSFGMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90.0	H2	10	H2-10-4	8	YISSGSGTIY	BBBBLLABBB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	50.0	H3	14	H3-14-*	-1	VRSIYYYGSSPFDF	BBBBBBBLBBBLAB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	87.5	H4	8	H4-8-1	6	RDDPKNTL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L1	16	L1-16-1	7	RSSKSLlhsngNTYLY	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	6	YRMSNLAS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L3	9	L3-9-cis7-1	5	MQHLEYPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	94.2	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	12	GSGTAF	EBAABB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	84.6	H1	13	H1-13-1	8	SASGFAFSSFGMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90.0	H2	10	H2-10-4	8	YISSGSGTIY	BBBBLLABBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	50.0	H3	14	H3-14-*	-1	VRSIYYYGSSPFDF	BBBBBBBLBBBLAB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	87.5	H4	8	H4-8-1	6	RDDPKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022