PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6QKD

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-*	-1	AASGGTFATSPMG	BBAALBAAABBBB
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-2	16	AISPSGGDRI	BBBAALABBB
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	0.0	H3	18	H3-18-*	-1	AVRRRfdgtSYYTGDYDS
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	50.0	H4	8	H4-8-*	-1	RDNAGYFI	BBAALABB
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-*	-1	AASGGTFATSPMG	BBBEEAAAABBBB
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	AISPSGGDRI	BBBAALBLBB
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	0.0	H3	18	H3-18-*	-1	AVRRRfdgtSYYTGDYDS
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	50.0	H4	8	H4-8-*	-1	RDNAGYFI	BBBLBABB
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-*	-1	AASGGTFATSPMG	BBBLEBAAABBBB
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-2	10	AISPSGGDRI	BBBAALABBB
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	0.0	H3	18	H3-18-*	-1	AVRRRfdgtSYYTGDYDS
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	50.0	H4	8	H4-8-*	-1	RDNAGYFI	BBAALABB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-3	26	AASGGTFATSPMG	BBBEAAAAABBBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-*	-1	AISPSGGDRI	BBBAALBLBB
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	0.0	H3	18	H3-18-*	-1	AVRRRfdgtSYYTGDYDS
K	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	50.0	H4	8	H4-8-*	-1	RDNAGYFI	BBAALABB
L	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L1	12	L1-12-2	5	RASQSVSsSYLA	BBABBBBLLBBB
L	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L2	8	L2-8-1	7	YDASSRAT	BLLABBBB
L	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	42.9	L3	9	L3-9-cis7-1	5	QQYSYSPVT	BBAABBbBB
L	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
M	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L1	12	L1-12-2	4	RASQSVSsSYLA	BBABBBBLLBBB
M	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L2	8	L2-8-1	6	YDASSRAT	BLLABBBB
M	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	42.9	L3	9	L3-9-cis7-1	10	QQYSYSPVT	BBAABBbBB
M	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
O	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L1	12	L1-12-2	6	RASQSVSsSYLA	BBABBBBLLBBB
O	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L2	8	L2-8-1	6	YDASSRAT	BLLABBBB
O	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	42.9	L3	9	L3-9-cis7-1	7	QQYSYSPVT	BBAABBbBB
O	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
T	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L1	12	L1-12-2	9	RASQSVSsSYLA	BBABBBBLLBBB
T	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L2	8	L2-8-1	7	YDASSRAT	BLLABBBB
T	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	42.9	L3	9	L3-9-cis7-1	7	QQYSYSPVT	BBAABBbBB
T	kappa	Lama.glama	Hu_IGKV3D-20*02	98.6	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022