PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6QD6

#CDRs = 4; #Clusters = 6.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AASgrtfstAAMG
A	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-1	16	GIYWTVGSTY	BBBAAALBBB
A	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
A	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	13	RDNAKNTV	BBAAALBB
B	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AASGRTFSTAAMG	BBBEBBAAABBBB
B	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-*	-1	GIYWTVGSTY	BBBEAALBBB
B	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
B	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	11	RDNAKNTV	BBAAALBB
C	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AASGRTFSTAAMG	BBBEBBAAABBBB
C	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-*	-1	GIYWTVGSTY	BBBEAALBBB
C	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
C	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	10	RDNAKNTV	BBAAALBB
D	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AasgrtfSTAAMG
D	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-*	-1	GIYwtVGSTY
D	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
D	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	12	RDNAKNTV	BBAAALBB
E	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AASGrtfsTAAMG
E	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-3	19	GIYWTVGSTY	BBBBLALBBB
E	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
E	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	10	RDNAKNTV	BBAAALBB
F	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AASGrtfSTAAMG
F	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-*	-1	GIYWTVGSTY	BBBEAALBBB
F	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
F	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	10	RDNAKNTV	BBAAALBB
G	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AASGRTFSTAAMG	BBABBBAAABBBB
G	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-*	-1	GIYWTVGSTY	BBBEABBBBB
G	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
G	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	7	RDNAKNTV	BBAAALBB
H	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	aasgrtfstAAMG
H	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-*	-1	GIYWTVGSTY	BBBEAALBBB
H	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AArrrgftlaptraneydy
H	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	11	RDNAKNTV	BBAAALBB
I	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AASGrtfSTAAMG
I	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-*	-1	GIYWTVGSTY	BBBEAALBBB
I	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
I	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	9	RDNAKNTV	BBAAALBB
J	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	84.6	H1	13	H1-13-*	-1	AasgrtfSTAAMG
J	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	60.0	H2	10	H2-10-3	18	GIYWTVGSTY	BBBBLALBBB
J	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H3	19	H3-19-*	-1	AARRRGftlapTRANEYDY
J	heavy	Helicobacter.pylori	Al_IGHV3-3*01_VHH	94.8	Al_IGHV3-3*01_VHH	100.0	H4	8	H4-8-1	7	RDNAKNTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022