PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PZW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L1	14	L1-14-2	11	TGTSSDVGgYNYVS	BBBAAAAAABBABB
E	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	87.5	L2	8	L2-8-1	6	YDVSNRPS	BLEABBBB
E	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	77.8	L3	10	L3-10-1	12	SSYTSSTTNV	BBBBAALBBB
E	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	7	KSGNTA	BBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	84.6	H1	13	H1-13-1	8	AASGFTFNNYGMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H2	10	H2-10-2	8	VISYDGSNKY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H3	17	H3-17-*	-1	AKDKRFITmilVGPFDY
F	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
G	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L1	14	L1-14-2	11	TGTSSDVGgYNYVS	BBBAAAAAABBABB
G	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	87.5	L2	8	L2-8-1	6	YDVSNRPS	BLEABBBB
G	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	77.8	L3	10	L3-10-1	12	SSYTSSTTNV	BBBBAALBBB
G	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	7	KSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	84.6	H1	13	H1-13-1	8	AASGFTFNNYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H2	10	H2-10-2	8	VISYDGSNKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H3	17	H3-17-*	-1	AKDKRFITmilVGPFDY
H	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
I	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L1	14	L1-14-2	11	TGTSSDVGgYNYVS	BBBAAAAAABBABB
I	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	87.5	L2	8	L2-8-1	6	YDVSNRPS	BLEABBBB
I	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	77.8	L3	10	L3-10-1	12	SSYTSSTTNV	BBBBAALBBB
I	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	7	KSGNTA	BBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	84.6	H1	13	H1-13-1	8	AASGFTFNNYGMH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H2	10	H2-10-2	8	VISYDGSNKY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H3	17	H3-17-*	-1	AKDKRFITmilVGPFDY
J	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	84.6	H1	13	H1-13-1	8	AASGFTFNNYGMH	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H2	10	H2-10-2	8	VISYDGSNKY	BBBAALABBB
K	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H3	17	H3-17-*	-1	AKDKRFITmilVGPFDY
K	heavy	Homo.sapiens	Hu_IGHV3-30*18	100.0	Hu_IGHV3-30*18	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L1	14	L1-14-2	11	TGTSSDVGgYNYVS	BBBAAAAAABBABB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	87.5	L2	8	L2-8-1	6	YDVSNRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	77.8	L3	10	L3-10-1	12	SSYTSSTTNV	BBBBAALBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	7	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022