PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PZF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	17	RASQSISTYLN	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	5	YAASSLQG	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	10	L3-10-*	-1	QQSYSTPlYT	BBAAABbBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	100.0	H1	13	H1-13-1	11	AASGFTFSSYWMS	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	100.0	H2	10	H2-10-2	17	NIKQDGSEKY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	50.0	H3	11	H3-11-*	-1	ASSTAAEFFDY	BBBABAABBAB
F	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	6	RHNAKNSL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	100.0	H1	13	H1-13-1	11	AASGFTFSSYWMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	100.0	H2	10	H2-10-2	15	NIKQDGSEKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	50.0	H3	11	H3-11-*	-1	ASSTAAEFFDY	BBBABAABBAB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	87.5	H4	8	H4-8-1	7	RHNAKNSL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	18	RASQSISTYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	5	YAASSLQG	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L3	10	L3-10-*	-1	QQSYSTPlYT	BBAAABbBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022