PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PYD

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	100.0	H1	13	H1-13-*	-1	SVTGDSITSGYWN	BBBLBBAABEBBB
A	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	88.9	H2	9	H2-9-1	6	YISYSGTTY	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	100.0	H3	11	H3-11-*	-1	ARARYGYGFDY	BBBBBLAEBAB
A	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	100.0	H4	8	H4-8-1	9	RDTSKNQY	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-*	-1	RSSQSIvhsnrNTYLE
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	7	FQGSHVPLT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	100.0	H1	13	H1-13-*	-1	SVTGDSITSGYWN	BBBLBBAABEBBB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	88.9	H2	9	H2-9-1	6	YISYSGTTY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	100.0	H3	11	H3-11-*	-1	ARARYGYGFDY	BBBBBLAEBAB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	100.0	Mo_IGHV3-8*02	100.0	H4	8	H4-8-1	8	RDTSKNQY	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-*	-1	RSSQSivhsnrnTYLE
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	7	FQGSHVPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EBBLBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022