PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PPG

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	90.9	L1	11	L1-11-1	7	RASQSVRSYLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	10	YDASNRAT	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L3	10	L3-10-cis78-*	-1	QQRSNWPpAT	BBAABBbBLB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	100.0	H1	13	H1-13-1	10	AASGFTFDDYAMH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	70.0	H2	10	H2-10-2	10	GINWSSGGIG	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	66.7	H3	16	H3-16-*	-1	ARDIGgfGEFYWNFGL
B	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	100.0	H4	8	H4-8-1	5	RDNAKNSL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	100.0	H1	13	H1-13-1	11	AASGFTFDDYAMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	70.0	H2	10	H2-10-2	13	GINWSSGGIG	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	66.7	H3	16	H3-16-*	-1	ARDIGgfGEFYWNFGL
H	heavy	Homo.sapiens	Hu_IGHV3-9*01	100.0	Hu_IGHV3-9*01	100.0	H4	8	H4-8-1	11	RDNAKNSL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	90.9	L1	11	L1-11-1	7	RASQSVRSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	9	YDASNRAT	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L3	10	L3-10-cis78-*	-1	QQRSNWPpAT	BBAABBbBLB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022