PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PLK

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	7	AASGFTFSNYAMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-2	7	TITADSDSKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	15	H3-15-*	-1	AKDRLSRgVGELYDS
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	8	RDNSKDTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	8	AASGFTFSNYAMS	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-2	5	TITADSDSKY	BBBAALABBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	15	H3-15-*	-1	AKDRLSRgVGELYDS
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	7	RDNSKDTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	8	RASQSIDVWLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	50.0	L2	8	L2-8-1	5	YKTSTLQT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-cis7-1	23	QKYDSYPWT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	7	GSGTEF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	11	RASQSIDVWLA	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	50.0	L2	8	L2-8-1	6	YKTSTLQT	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-cis7-1	23	QKYDSYPWT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-*	-1	GSGTEF	BALABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022