PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PE9

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	84.6	H1	13	H1-13-1	9	AASGFTFSDYGMN	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	70.0	H2	10	H2-10-*	-1	YISSGRSNIY	BBBABALBBB
A	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H3	9	H3-9-*	-1	ARSWGYFDV	BBBBLBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H4	8	H4-8-1	5	RDNAKNSL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	64.7	L1	17	L1-17-1	15	KSSQSLlnlgnqKNYLT	BBABBABBAAALBBBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-1	17	QNDYTYPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	84.6	H1	13	H1-13-1	12	AASGFTFSDYGMN	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	70.0	H2	10	H2-10-1	25	YISSGRSNIY	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H3	9	H3-9-*	-1	ARSWGYFDV	BBBBLBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H4	8	H4-8-1	11	RDNAKNSL	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	64.7	L1	17	L1-17-1	10	KSSQSLlnlgnqKNYLT	BBABBABBAAALBBBBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	12	YWASTRES	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-1	15	QNDYTYPLT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	84.6	H1	13	H1-13-1	8	AASGFTFSDYGMN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	70.0	H2	10	H2-10-1	22	YISSGRSNIY	BBBABALBBB
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H3	9	H3-9-*	-1	ARSWGYFDV	BBBBLBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H4	8	H4-8-1	5	RDNAKNSL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	64.7	L1	17	L1-17-1	13	KSSQSLlnlgnqKNYLT	BBABBABBAAALBBBBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	12	YWASTRES	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-1	16	QNDYTYPLT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	84.6	H1	13	H1-13-1	11	AASGFTFSDYGMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	70.0	H2	10	H2-10-1	23	YISSGRSNIY	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H3	9	H3-9-*	-1	ARSWGYFDV	BBBBLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	84.6	H1	13	H1-13-1	15	AASGFTFSDYGMN	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	70.0	H2	10	H2-10-*	-1	YISSGRSNIY	BBBAAALBBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H3	9	H3-9-*	-1	ARSWGYFDV	BBBBLBBAB
K	heavy	Homo.sapiens	Hu_IGHV3-21*05	98.6	Hu_IGHV3-21*05	100.0	H4	8	H4-8-1	11	RDNAKNSL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	64.7	L1	17	L1-17-1	11	KSSQSLlnlgnqKNYLT	BBABBABBAAALBBBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	11	YWASTRES	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-1	14	QNDYTYPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	64.7	L1	17	L1-17-1	12	KSSQSLlnlgnqKNYLT	BBABBABBAAALBBBBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	18	YWASTRES	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-1	17	QNDYTYPLT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022