PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PDX

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	76.9	H1	13	H1-13-1	12	AVSGASISSFYWS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	77.8	H2	9	H2-9-1	23	YIYYSGKTQ	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	100.0	H3	23	H3-23-*	-1	ARHTLAYHYddegymqpgDAFDL
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	12.5	H4	8	H4-8-1	16	LQNWNNHV	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	69.2	L1	13	L1-13-1	20	SGSSSDIGKSFVS	BBBAAAAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	100.0	L2	8	L2-8-*	-1	YDNNKRPS	BEBLBBBB
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	77.8	L3	10	L3-10-1	18	GTWDSSLIWV	BBBBAALBBB
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	76.9	H1	13	H1-13-1	13	AVSGASISSFYWS	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	77.8	H2	9	H2-9-1	23	YIYYSGKTQ	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	100.0	H3	23	H3-23-*	-1	ARHTLAYHYddegymqpgDAFDL
M	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	12.5	H4	8	H4-8-1	16	LQNWNNHV	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	69.2	L1	13	L1-13-1	21	SGSSSDIGKSFVS	BBBAAAAAABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	100.0	L2	8	L2-8-*	-1	YDNNKRPS	ABEABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	77.8	L3	10	L3-10-1	18	GTWDSSLIWV	BBBBAALBBB
N	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	13	KSGTSA	BBEABB
O	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	76.9	H1	13	H1-13-1	13	AVSGASISSFYWS	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	77.8	H2	9	H2-9-1	24	YIYYSGKTQ	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	100.0	H3	23	H3-23-*	-1	ARHTLAYHYddegymqpgDAFDL
O	heavy	Homo.sapiens	Hu_IGHV4-59*11	72.6	Hu_IGHV4-59*11	12.5	H4	8	H4-8-1	15	LQNWNNHV	BBAAALBB
P	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	69.2	L1	13	L1-13-1	21	SGSSSDIGKSFVS	BBBAAAAAABBBB
P	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	100.0	L2	8	L2-8-4	13	YDNNKRPS	BEAABBBB
P	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	77.8	L3	10	L3-10-1	18	GTWDSSLIWV	BBBBAALBBB
P	lambda	Homo.sapiens	Hu_IGLV1-51*01	91.2	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	15	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022