PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PDS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	72.7	L1	11	L1-11-2	3	RASQGIDNNLS	BBABBALLBBB
A	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	50.0	L2	8	L2-8-1	11	HHSSTLET	BLLABBBB
A	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	57.1	L3	9	L3-9-cis7-1	5	QQYENFPIT	BBAABBbBB
A	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	66.7	L4	6	L4-6-1	8	GSGADY	EBEABB
B	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	CDRLenMismatch	-1.0	H1	15	H1-15-1	21	TLSGDSVSSryYFWS	BBBLBBAABBLBBBB
B	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	Ma_IGHV4-2*01	0.0	H2	10	H2-10-*	-1	GFYSNVEGYN	BBBAABBEBB
B	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	Ma_IGHV4-2*01	50.0	H3	15	H3-15-*	-1	VRERVVAhNYYGLDS
B	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	Ma_IGHV4-2*01	62.5	H4	8	H4-8-1	6	RDASKNQV	BBAAALBB
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	CDRLenMismatch	-1.0	H1	15	H1-15-1	21	TLSGDSVSSryYFWS	BBBLBBAABBLBBBB
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	Ma_IGHV4-2*01	0.0	H2	10	H2-10-*	-1	GFYSNVEGYN	BBBAABBEBB
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	Ma_IGHV4-2*01	50.0	H3	15	H3-15-*	-1	VRERVVAhNYYGLDS
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	87.7	Ma_IGHV4-2*01	62.5	H4	8	H4-8-1	6	RDASKNQV	BBAAALBB
L	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	72.7	L1	11	L1-11-2	4	RASQGIDNNLS	BBABBALLBBB
L	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	50.0	L2	8	L2-8-1	10	HHSSTLET	BLLABBBB
L	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	57.1	L3	9	L3-9-cis7-1	4	QQYENFPIT	BBAABBbBB
L	kappa	Macaca.mulatta	Ma_IGKV1S27*01	87.0	Ma_IGKV1S27*01	66.7	L4	6	L4-6-1	7	GSGADY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022