PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PCI

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	84.6	H1	13	H1-13-1	15	AASGFMFSNYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	70.0	H2	10	H2-10-2	25	FIRYDDSKKF	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	100.0	H3	24	H3-24-*	-1	AKEllqvytsawgEGHSYYYALDV
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	84.6	H1	13	H1-13-1	15	AASGFMFSNYGMH	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	70.0	H2	10	H2-10-2	25	FIRYDDSKKF	BBBAALABBB
I	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	100.0	H3	24	H3-24-*	-1	AKEllqvytsawgEGHSYYYALDV
I	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	84.6	H1	13	H1-13-1	15	AASGFMFSNYGMH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	70.0	H2	10	H2-10-2	25	FIRYDDSKKF	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	100.0	H3	24	H3-24-*	-1	AKEllqvytsawgEGHSYYYALDV
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	94.5	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	81.8	L1	11	L1-11-1	26	RASQDISNWLA	BBABBALABBB
K	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	75.0	L2	8	L2-8-1	16	YTASILQS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	71.4	L3	9	L3-9-cis7-1	19	QQGKSFPYT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	100.0	L4	6	L4-6-1	22	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	81.8	L1	11	L1-11-1	26	RASQDISNWLA	BBABBALABBB
L	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	75.0	L2	8	L2-8-1	16	YTASILQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	71.4	L3	9	L3-9-cis7-1	19	QQGKSFPYT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	100.0	L4	6	L4-6-1	22	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	81.8	L1	11	L1-11-1	26	RASQDISNWLA	BBABBALABBB
M	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	75.0	L2	8	L2-8-1	16	YTASILQS	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	71.4	L3	9	L3-9-cis7-1	19	QQGKSFPYT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV1-12*01	95.7	Hu_IGKV1-12*01	100.0	L4	6	L4-6-1	22	GSGTDF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	61.5	H1	13	H1-13-4	21	TVSGASIRGYFWN	BBBLBBABLBBBB
N	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	66.7	H2	9	H2-9-1	11	YIHSTGSTN	BBBAALBBB
N	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	100.0	H3	18	H3-18-*	-1	ARGAwnvaTVYYYYGMDV
N	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	87.5	H4	8	H4-8-1	9	VDTSKNQV	BBAAALBB
O	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	61.5	H1	13	H1-13-4	21	TVSGASIRGYFWN	BBBLBBABLBBBB
O	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	66.7	H2	9	H2-9-1	11	YIHSTGSTN	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	100.0	H3	18	H3-18-*	-1	ARGAwnvaTVYYYYGMDV
O	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	87.5	H4	8	H4-8-1	9	VDTSKNQV	BBAAALBB
P	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	61.5	H1	13	H1-13-4	21	TVSGASIRGYFWN	BBBLBBABLBBBB
P	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	66.7	H2	9	H2-9-1	11	YIHSTGSTN	BBBAALBBB
P	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	100.0	H3	18	H3-18-*	-1	ARGAwnvaTVYYYYGMDV
P	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	87.5	H4	8	H4-8-1	9	VDTSKNQV	BBAAALBB
Q	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsSYFA	BBABBALBBABB
Q	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	13	SGTSTRAP	BLLABBBB
Q	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	71.4	L3	9	L3-9-1	16	QQYGNSLYT	BBBELLBBB
Q	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L4	6	L4-6-3	26	GSGTDF	EAAABB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsSYFA	BBABBALBBABB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	13	SGTSTRAP	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	71.4	L3	9	L3-9-1	16	QQYGNSLYT	BBBELLBBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L4	6	L4-6-3	26	GSGTDF	EAAABB
S	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsSYFA	BBABBALBBABB
S	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	13	SGTSTRAP	BLLABBBB
S	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	71.4	L3	9	L3-9-1	16	QQYGNSLYT	BBBELLBBB
S	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L4	6	L4-6-3	26	GSGTDF	EAAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022