PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6P8D

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	76.9	H1	13	H1-13-1	12	KASDYTFTRYWMN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	70.0	H2	10	H2-10-1	9	YIDPGNGYTK	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	50.0	H3	9	H3-9-*	-1	ASGYVAFHY	BBEABBLAB
A	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	7	ADKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	93.8	L1	16	L1-16-1	8	RSSQSLlykdgKTYLN	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L2	8	L2-8-1	9	YLMSTRAS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	71.4	L3	9	L3-9-cis7-1	8	QQLVQHPFT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L4	6	L4-6-3	12	GSGTDF	EBAABB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	76.9	H1	13	H1-13-1	11	KASDYTFTRYWMN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	70.0	H2	10	H2-10-1	9	YIDPGNGYTK	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	50.0	H3	9	H3-9-*	-1	ASGYVAFHY	BBEABBLAB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	8	ADKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	93.8	L1	16	L1-16-1	9	RSSQSLlykdgKTYLN	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L2	8	L2-8-1	8	YLMSTRAS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	71.4	L3	9	L3-9-cis7-1	8	QQLVQHPFT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV2-112*01	98.6	Mo_IGKV2-112*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EBLABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022