PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6OZC

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-1	20	GVSNFRISAHTMN	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	11	SISTSSTYRD	BBBBLLABBB
C	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
C	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	15	RDDLEDFV	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBABBBAAABB
D	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	12	YKASTLKT	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	17	QHYAGYSAT	BBBBAABBB
D	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-1	16	GVSNFRISAHTMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	10	SISTSSTYRD	BBBBLLABBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	13	RDDLEDFV	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-1	20	GVSNFRISAHTMN	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	11	SISTSSTYRD	BBBBLLABBB
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	15	RDDLEDFV	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-1	20	GVSNFRISAHTMN	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	11	SISTSSTYRD	BBBBLLABBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	15	RDDLEDFV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBABBAAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	16	YKASTLKT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	18	QHYAGYSAT	BBBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	17	GSGTEF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBABBBAAABB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	12	YKASTLKT	BLEABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	17	QHYAGYSAT	BBBBAABBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBABBBAAABB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	12	YKASTLKT	BLEABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	17	QHYAGYSAT	BBBBAABBB
N	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-1	16	GVSNFRISAHTMN	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	10	SISTSSTYRD	BBBBLLABBB
O	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
O	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	13	RDDLEDFV	BBAAALBB
P	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-1	16	GVSNFRISAHTMN	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	10	SISTSSTYRD	BBBBLLABBB
P	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
P	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	13	RDDLEDFV	BBAAALBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBABBAAABBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	16	YKASTLKT	BLLABBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	18	QHYAGYSAT	BBBBAABBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	17	GSGTEF	EBEABB
R	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBABBAAABBB
R	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	16	YKASTLKT	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	57.1	L3	9	L3-9-3	18	QHYAGYSAT	BBBBAABBB
R	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.9	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	17	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022