PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6OUS

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
M	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	69.2	H1	13	H1-13-1	16	TVSGFSFDDSAMS	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	75.0	H2	12	H2-12-1	15	FIKSKtyGGTKE	BBBBAAALLBBB
M	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	100.0	H3	18	H3-18-*	-1	TRGApyggNSDYYYGLDV
M	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	87.5	H4	8	H4-8-1	11	RDDSKNIA	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-2	22	RTSQDVRGALA	BBABBALLBBB
N	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-4	12	FDASSLET	BEAABBBB
N	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	57.1	L3	9	L3-9-cis7-1	22	QQFLDFPFT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	14	GSGTVF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	69.2	H1	13	H1-13-1	17	TVSGFSFDDSAMS	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	75.0	H2	12	H2-12-1	20	FIKSKtyGGTKE	BBBBAAALLBBB
O	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	100.0	H3	18	H3-18-*	-1	TRGApyggNSDYYYGLDV
O	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	87.5	H4	8	H4-8-1	11	RDDSKNIA	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-2	20	RTSQDVRGALA	BBABBALLBBB
P	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-*	-1	FDASSLET	ABAABBBB
P	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	57.1	L3	9	L3-9-cis7-1	22	QQFLDFPFT	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	15	GSGTVF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	69.2	H1	13	H1-13-1	17	TVSGFSFDDSAMS	BBBLBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	75.0	H2	12	H2-12-*	-1	FIKSKtyGGTKE	BBBBAABEABBB
Q	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	100.0	H3	18	H3-18-*	-1	TRGApyggNSDYYYGLDV
Q	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	87.5	H4	8	H4-8-1	11	RDDSKNIA	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-2	19	RTSQDVRGALA	BBABBALLBBB
R	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-4	13	FDASSLET	BEAABBBB
R	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	57.1	L3	9	L3-9-cis7-1	22	QQFLDFPFT	BBAABBbBB
R	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	14	GSGTVF	EBEABB
S	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	69.2	H1	13	H1-13-1	17	TVSGFSFDDSAMS	BBBLBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	75.0	H2	12	H2-12-*	-1	FIKSKtyGGTKE	BBBBABLLLBBB
S	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	100.0	H3	18	H3-18-*	-1	TRGApyggNSDYYYGLDV
S	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	87.5	H4	8	H4-8-1	11	RDDSKNIA	BBAAALBB
T	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-2	22	RTSQDVRGALA	BBABBALLABB
T	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-4	12	FDASSLET	BEAABBBB
T	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	57.1	L3	9	L3-9-cis7-1	22	QQFLDFPFT	BBAABBbBB
T	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	15	GSGTVF	EBEABB
U	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	69.2	H1	13	H1-13-1	17	TVSGFSFDDSAMS	BBBLBBAAABBBB
U	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	75.0	H2	12	H2-12-*	-1	FIKSKtyGGTKE	BBBBABLBLBBB
U	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	100.0	H3	18	H3-18-*	-1	TRGApyggNSDYYYGLDV
U	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	87.5	H4	8	H4-8-1	11	RDDSKNIA	BBAAALBB
V	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-2	20	RTSQDVRGALA	BBABBALLBBB
V	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-4	11	FDASSLET	BEAABBBB
V	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	57.1	L3	9	L3-9-cis7-1	23	QQFLDFPFT	BBAABBbBB
V	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	15	GSGTVF	EBEABB
W	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	69.2	H1	13	H1-13-1	17	TVSGFSFDDSAMS	BBBLBBAAABBBB
W	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	75.0	H2	12	H2-12-*	-1	FIKSKtyGGTKE	BBBBAAAELBBB
W	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	100.0	H3	18	H3-18-*	-1	TRGApyggNSDYYYGLDV
W	heavy	Homo.sapiens	Hu_IGHV3-49*04	94.5	Hu_IGHV3-49*04	87.5	H4	8	H4-8-1	11	RDDSKNIA	BBAAALBB
X	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-2	19	RTSQDVRGALA	BBABBALLBBB
X	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	75.0	L2	8	L2-8-4	12	FDASSLET	BEAABBBB
X	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	57.1	L3	9	L3-9-cis7-1	22	QQFLDFPFT	BBAABBbBB
X	kappa	Homo.sapiens	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	15	GSGTVF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022