PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6ORQ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	92.3	H1	13	H1-13-*	-1	AASGFTFSRYGMS	BBBABBABLBBBB
D	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H2	10	H2-10-*	-1	TISSGGSYTY	BBBBLBBBAB
D	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H3	14	H3-14-*	-1	ARHGITTVGVAMDY	BBAEBLBAABBBAB
D	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	16	RDNAKNTL	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L1	15	L1-15-*	-1	KASQSVDydgdSYMN	ABABBBBBABALBBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L2	8	L2-8-1	19	YAASNLES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L3	9	L3-9-*	-1	QQSNEDPYT	BABBAABBB
E	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L4	6	L4-6-2	30	GSGTDF	BBEABB
H	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	92.3	H1	13	H1-13-*	-1	AASGFTFSRYGMS	BBBABBABLBBBB
H	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H2	10	H2-10-*	-1	TISSGGSYTY	BBBBLBBBAB
H	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H3	14	H3-14-*	-1	ARHGITTVGVAMDY	BBAEBLBAABBBAB
H	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	16	RDNAKNTL	BBAAALBB
J	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	92.3	H1	13	H1-13-*	-1	AASGFTFSRYGMS	BBBABBABLBBBB
J	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H2	10	H2-10-*	-1	TISSGGSYTY	BBBBLBBBAB
J	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H3	14	H3-14-*	-1	ARHGITTVGVAMDY	BBAEBLBAABBBAB
J	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	16	RDNAKNTL	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L1	15	L1-15-*	-1	KASQSVDydgdSYMN	ABABBBBBABALBBB
K	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L2	8	L2-8-1	19	YAASNLES	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L3	9	L3-9-*	-1	QQSNEDPYT	BABBAABBB
K	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L4	6	L4-6-2	30	GSGTDF	BBEABB
L	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L1	15	L1-15-*	-1	KASQSVDydgdSYMN	ABABBBBBABALBBB
L	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L2	8	L2-8-1	19	YAASNLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L3	9	L3-9-*	-1	QQSNEDPYT	BABBAABBB
L	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L4	6	L4-6-2	30	GSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022