PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6OKN

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	76.9	H1	13	H1-13-1	13	KASGYTFTDSYMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	30.0	H2	10	H2-10-6	17	DMYPDNGDSS	BBBABLLBBB
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	0.0	H3	10	H3-10-*	-1	VLAPRWYFSV	BBBBBbBBAB
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	87.5	H4	8	H4-8-1	9	RDTSTSTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	81.8	L1	11	L1-11-2	18	RASQDISNYLN	BBABBALLABB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	13	YYTSRLRS	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	13	QQGHTLPPT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	76.9	H1	13	H1-13-1	10	KASGYTFTDSYMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	30.0	H2	10	H2-10-*	-1	DMYPDNGDSS	BBBBBBbBAB
C	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	0.0	H3	10	H3-10-*	-1	VLAPRWYFSV	BBBBEABBAB
C	heavy	Homo.sapiens	Hu_IGHV1-46*01	89.0	Hu_IGHV1-46*01	87.5	H4	8	H4-8-1	8	RDTSTSTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	81.8	L1	11	L1-11-2	16	RASQDISNYLN	BBABBALLABB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	50.0	L2	8	L2-8-4	26	YYTSRLRS	BEAABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	13	QQGHTLPPT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022