PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6NMU

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	72.7	L1	11	L1-11-1	10	RASQTVGSKLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	87.5	L2	8	L2-8-1	8	YDATNRAT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	57.1	L3	10	L3-10-*	-1	QQYYYWpPYR	BBAABBbAAB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	76.9	H1	13	H1-13-1	11	AASGFSFSSYAMN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	50.0	H2	10	H2-10-2	20	RINSGGGGTD	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	100.0	H3	12	H3-12-*	-1	AKQYDWNSFFDY	BBBABAABBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	87.5	H4	8	H4-8-1	8	RDNSENTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	76.9	H1	13	H1-13-1	7	AASGFSFSSYAMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	50.0	H2	10	H2-10-2	14	RINSGGGGTD	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	100.0	H3	12	H3-12-*	-1	AKQYDWNSFFDY	BBBABAABBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	93.1	Hu_IGHV3-NL1*01	87.5	H4	8	H4-8-1	9	RDNSENTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	72.7	L1	11	L1-11-1	8	RASQTVGSKLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	87.5	L2	8	L2-8-1	7	YDATNRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	57.1	L3	10	L3-10-*	-1	QQYYYWpPYR	BBAABBbAAB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	89.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022