PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6NMS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Ca_IGKV1-7*01	63.6	L1	11	L1-11-1	5	RASQSVYTYLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Ca_IGKV1-7*01	75.0	L2	8	L2-8-1	5	YGASSRAT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Hu_IGKV3-20*01	57.1	L3	10	L3-10-cis78-1	7	QQYYDRpPLT	BBAABBbbBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Hu_IGKV3-20*01	83.3	L4	6	L4-6-1	8	GSGTEF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Ca_IGHV1S27*01	92.3	H1	13	H1-13-1	7	AASGFTFSSYDMN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Ca_IGHV1S27*01	30.0	H2	10	H2-10-2	9	LISGSGEIIY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Hu_IGHV3-NL1*01	100.0	H3	12	H3-12-*	-1	AKENNRYRFFDD	BBBBAABABBAB
B	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Hu_IGHV3-NL1*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Ca_IGHV1S27*01	92.3	H1	13	H1-13-1	7	AASGFTFSSYDMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Ca_IGHV1S27*01	30.0	H2	10	H2-10-2	10	LISGSGEIIY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Hu_IGHV3-NL1*01	100.0	H3	12	H3-12-*	-1	AKENNRYRFFDD	BBBBAABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	95.8	Hu_IGHV3-NL1*01	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Ca_IGKV1-7*01	63.6	L1	11	L1-11-1	5	RASQSVYTYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Ca_IGKV1-7*01	75.0	L2	8	L2-8-1	5	YGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Hu_IGKV3-20*01	57.1	L3	10	L3-10-cis78-1	6	QQYYDRpPLT	BBAABBbbBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Hu_IGKV3-20*01	83.3	L4	6	L4-6-1	8	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022