PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6NJN

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	86.7	L1	15	L1-15-1	11	RASESVDSYgssfVH	BBABBABBLLBBBBB
I	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	75.0	L2	8	L2-8-1	19	FLASKLES	BLLABBBB
I	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	85.7	L3	9	L3-9-cis7-1	16	QQTNEDPYT	BBAABBbBB
I	kappa	Mus.musculus	Mo_IGKV3-10*01	100.0	Mo_IGKV3-10*01	100.0	L4	6	L4-6-*	-1	GSRTDF	EBLABB
I	heavy	Mus.musculus	Mo_IGHV4-1*02	95.9	Mo_IGHV4-1*02	92.3	H1	13	H1-13-1	16	AASGFDFSEYWMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV4-1*02	95.9	Mo_IGHV4-1*02	80.0	H2	10	H2-10-2	20	EINPDSSSID	BBBAALABBB
I	heavy	Mus.musculus	Mo_IGHV4-1*02	95.9	Mo_IGHV4-1*02	100.0	H3	12	H3-12-*	-1	ARPRgnyvvMDY
I	heavy	Mus.musculus	Mo_IGHV4-1*02	95.9	Mo_IGHV4-1*02	87.5	H4	8	H4-8-1	10	RDNAKKTL	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	90.9	L1	11	L1-11-2	13	RASQDISNYLS	BBABBALLBBB
J	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	20	YYTSRLHS	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	16	QQGNTLPLT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	83.3	L4	6	L4-6-1	9	GSGIDY	EBEABB
K	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	20	TVSGFSLTNYGVH	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H2	9	H2-9-1	10	VIWAGGSTN	BBBAALBBB
K	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H3	13	H3-13-*	-1	AREDYDYDWHFDV	BBBBBBLBBBBAB
K	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
N	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	90.9	L1	11	L1-11-2	14	RASQDISNYLS	BBABBALLBBB
N	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	18	YYTSRLHS	BLLABBBB
N	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	16	QQGNTLPLT	BBAABBbBB
N	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	83.3	L4	6	L4-6-1	9	GSGIDY	EBEABB
O	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	20	TVSGFSLTNYGVH	BBBLBBAAABBBB
O	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H2	9	H2-9-1	11	VIWAGGSTN	BBBAALBBB
O	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H3	13	H3-13-*	-1	AREDYDYDWHFDV	BBBBBBLBBBBAB
O	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H4	8	H4-8-1	8	KDNSKSQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022