PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6NJM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
K	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	90.9	L1	11	L1-11-2	13	RASQDISNYLS	BBABBALLBBB
K	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	16	YYTSRLHS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	19	QQGNTLPLT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	83.3	L4	6	L4-6-1	9	GSGIDY	EBEABB
L	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	22	TVSGFSLTNYGVH	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H2	9	H2-9-1	13	VIWAGGSTN	BBBAALBBB
L	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H3	13	H3-13-*	-1	AREDYDYDWHFDV	BBBBBBLBBBBAB
L	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	90.9	L1	11	L1-11-2	12	RASQDISNYLS	BBABBALLBBB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	16	YYTSRLHS	BLLABBBB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	19	QQGNTLPLT	BBAABBbBB
O	kappa	Mus.musculus	Mo_IGKV10-96*01	94.2	Mo_IGKV10-96*01	83.3	L4	6	L4-6-1	9	GSGIDY	EBEABB
P	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	22	TVSGFSLTNYGVH	BBBLBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H2	9	H2-9-1	12	VIWAGGSTN	BBBAALBBB
P	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H3	13	H3-13-*	-1	AREDYDYDWHFDV	BBBBBBLBBBBAB
P	heavy	Mus.musculus	Mo_IGHV2-9*02	95.9	Mo_IGHV2-9*02	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022