PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6NIU

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	92.3	H1	13	H1-13-1	23	TVSDGSISSYYWS	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	66.7	H2	9	H2-9-1	16	SIYYTGSTN	BBBAALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H3	14	H3-14-*	-1	AGLDRYSWNEGGDH	BBBBAALABBLEBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H4	8	H4-8-1	14	VDTSKNQF	BBAAALBB
G	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	76.9	L1	13	L1-13-1	12	SGSRSNLGKNTVN	BBBAAAAAABBBB
G	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	50.0	L2	8	L2-8-*	-1	YNHSRRPS	BLLLBBBB
G	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L3	12	L3-12-*	-1	AAWDDSLNGlYV
G	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L4	6	L4-6-*	-1	KSGTSA	BBAABB
H	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	92.3	H1	13	H1-13-1	23	TVSDGSISSYYWS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	66.7	H2	9	H2-9-1	15	SIYYTGSTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H3	14	H3-14-*	-1	AGLDRYSWNEGGDH	BBBBAALABBLEBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H4	8	H4-8-1	14	VDTSKNQF	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	92.3	H1	13	H1-13-1	23	TVSDGSISSYYWS	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	66.7	H2	9	H2-9-1	15	SIYYTGSTN	BBBAALBBB
I	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H3	14	H3-14-*	-1	AGLDRYSWNEGGDH	BBBBAALABBLEBB
I	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H4	8	H4-8-1	14	VDTSKNQF	BBAAALBB
J	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	76.9	L1	13	L1-13-1	12	SGSRSNLGKNTVN	BBBAAAAAABBBB
J	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	50.0	L2	8	L2-8-*	-1	YNHSRRPS	BLLLBBBB
J	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L3	12	L3-12-*	-1	AAWDDSLNGlYV
J	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L4	6	L4-6-*	-1	KSGTSA	BBAABB
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	76.9	L1	13	L1-13-1	13	SGSRSNLGKNTVN	BBBAAAAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	50.0	L2	8	L2-8-*	-1	YNHSRRPS	BLLLBBBB
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L3	12	L3-12-*	-1	AAWDDSLNGlYV
L	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L4	6	L4-6-*	-1	KSGTSA	BBAABB
M	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	92.3	H1	13	H1-13-1	22	TVSDGSISSYYWS	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	66.7	H2	9	H2-9-1	15	SIYYTGSTN	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H3	14	H3-14-*	-1	AGLDRYSWNEGGDH	BBBBAALABBLEBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*04	93.2	Hu_IGHV4-59*04	100.0	H4	8	H4-8-1	14	VDTSKNQF	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	76.9	L1	13	L1-13-1	13	SGSRSNLGKNTVN	BBBAAAAAABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	50.0	L2	8	L2-8-*	-1	YNHSRRPS	BLLLBBBB
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L3	12	L3-12-*	-1	AAWDDSLNGlYV
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	94.1	Hu_IGLV1-44*01	100.0	L4	6	L4-6-*	-1	KSGTSA	BBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022