PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6NFN

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	9	RSSTGTITtSNYAN	BBAAEBBBAAALBB
A	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-*	-1	GATSIRAP	BLEABBBA
A	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	8	ALWYNTHYV	BBBBLABBB
A	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
B	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	11	AASGFIFSSDWMN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	13	NINQDGSEKY	BBBAALABBB
B	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
B	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	5	RDNAQNSL	BBAAALBB
C	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	13	RSSTGTITtSNYAN	BBAABBBBAAALBB
C	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-*	-1	GATSIRAP	BLLABBBA
C	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	8	ALWYNTHYV	BBBBLABBB
C	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
D	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	10	AASGFIFSSDWMN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	11	NINQDGSEKY	BBBAALABBB
D	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
D	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	8	RDNAQNSL	BBAAALBB
E	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	8	RSSTGTITtSNYAN	BBAAEBBBAAALBB
E	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-1	8	GATSIRAP	BLEABBBB
E	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	11	ALWYNTHYV	BBBBLABBB
E	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	9	AASGFIFSSDWMN	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	12	NINQDGSEKY	BBBAALABBB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
F	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	7	RDNAQNSL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	8	AASGFIFSSDWMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	11	NINQDGSEKY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	25	RDNAQNSL	BBAAALBB
I	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	10	RSSTGTITtSNYAN	BBAAEBBBAAALBB
I	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-1	6	GATSIRAP	BLLABBBB
I	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	7	ALWYNTHYV	BBBBLABBB
I	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	9	AASGFIFSSDWMN	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	9	NINQDGSEKY	BBBAALABBB
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	4	RDNAQNSL	BBAAALBB
L	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	23	RSSTGTITtSNYAN	BBAALBBBAAALBB
L	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-*	-1	GATSIRAP	BLEABBBA
L	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	9	ALWYNTHYV	BBBBLABBB
L	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
M	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	7	RSSTGTITtSNYAN	BBAAEBBBAAALBB
M	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-*	-1	GATSIRAP	BLLABBBA
M	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	8	ALWYNTHYV	BBBBEABBB
M	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
N	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	10	AASGFIFSSDWMN	BBBLBBAAABBBB
N	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	11	NINQDGSEKY	BBBAALABBB
N	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
N	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	5	RDNAQNSL	BBAAALBB
O	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	11	RSSTGTITtSNYAN	BBAAEBBBAAALBB
O	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-1	5	GATSIRAP	BLLABBBB
O	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	7	ALWYNTHYV	BBBBLABBB
O	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	9	AASGFIFSSDWMN	BBBLBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	10	NINQDGSEKY	BBBAALABBB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	6	RDNAQNSL	BBAAALBB
Q	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	85.7	L1	14	L1-14-1	10	RSSTGTITtSNYAN	BBAAEBBBAAALBB
Q	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L2	8	L2-8-1	7	GATSIRAP	BLEABBBB
Q	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	75.0	L3	9	L3-9-4	8	ALWYNTHYV	BBBBLABBB
Q	lambda	Mus.musculus	Mo_IGLV2*01	91.2	Mo_IGLV2*01	83.3	L4	6	L4-6-*	-1	LIGGKA	BBLLBB
R	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	69.2	H1	13	H1-13-1	8	AASGFIFSSDWMN	BBBLBBAAABBBB
R	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	8	NINQDGSEKY	BBBAALABBB
R	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	50.0	H3	6	H3-6-*	-1	AKELGP	BBABEB
R	heavy	Mus.musculus	Mo_IGHV5-9-3*01	84.9	Mo_IGHV5-9-3*01	75.0	H4	8	H4-8-1	6	RDNAQNSL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022