PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6N8D

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	63.6	L1	11	L1-11-1	10	KASRSISIYLA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	75.0	L2	8	L2-8-1	11	YDASYRAI	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	71.4	L3	10	L3-10-cis78-*	-1	QHRSSWPaLT	BBAABBaBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	61.5	H1	13	H1-13-1	8	AASGFAFSNHGMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	50.0	H2	10	H2-10-1	20	YISGSTGAIH	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	100.0	H3	19	H3-19-*	-1	ARDGprpdgTGYAGPSNDY
D	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	87.5	H4	8	H4-8-1	11	RDNARNSL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	63.6	L1	11	L1-11-1	9	KASRSISIYLA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	75.0	L2	8	L2-8-1	11	YDASYRAI	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	71.4	L3	10	L3-10-cis78-*	-1	QHRSSWPaLT	BBAABBaBBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	61.5	H1	13	H1-13-1	8	AASGFAFSNHGMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	50.0	H2	10	H2-10-1	19	YISGSTGAIH	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	100.0	H3	19	H3-19-*	-1	ARDGprpdgTGYAGPSNDY
F	heavy	Homo.sapiens	Hu_IGHV3-48*02	90.4	Hu_IGHV3-48*02	87.5	H4	8	H4-8-1	10	RDNARNSL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022