PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6N7J

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	69.2	H1	13	H1-13-1	18	AVYGGSFTTTYWN	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	55.6	H2	9	H2-9-1	12	EVNYSGNAN	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	0.0	H3	16	H3-16-*	-1	TSRIRshIAYSWKGDV
A	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	100.0	H4	8	H4-8-1	11	VDTSKNQF	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	58.3	L1	12	L1-12-*	-1	RASQSVpRNYIG	BBABBBAALBBB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	75.0	L2	8	L2-8-4	13	YGASSRAA	BEAABBBB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	14.3	L3	9	L3-9-cis7-1	16	HQYDRLPYT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	69.2	H1	13	H1-13-*	-1	AVYGGSFTTTYWN	BBABAEAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	55.6	H2	9	H2-9-1	9	EVNYSGNAN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	0.0	H3	16	H3-16-*	-1	TSRIRshIAYSWKGDV
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	93.2	Hu_IGHV4-34*01	100.0	H4	8	H4-8-1	9	VDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	58.3	L1	12	L1-12-*	-1	RASQSVpRNYIG	BBABBBAALBBB
L	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	75.0	L2	8	L2-8-4	14	YGASSRAA	BEAABBBB
L	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	14.3	L3	9	L3-9-cis7-1	16	HQYDRLPYT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3D-20*02	91.3	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022