PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6N5D

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	92.3	H1	13	H1-13-*	-1	AASGFTFSSYDMS	BBBLBBBLABBBB
C	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H2	10	H2-10-*	-1	YISSGGDYIY	BBBLLEABBB
C	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H3	12	H3-12-*	-1	TRVGEYDAWFAY	BBBBAAABABAB
C	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H4	8	H4-8-1	11	RDNARNTL	BBAAALBB
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-1	9	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L2	8	L2-8-*	-1	GGTKNRAP	BLLABBBA
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-3	20	ALWYSNHWV	BBBBAABBB
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	26	LIGDKA	BBEABB
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	92.3	H1	13	H1-13-*	-1	AASGFTFSSYDMS	BBBLBBBLABBBB
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H2	10	H2-10-*	-1	YISSGGDYIY	BBBLLEABBB
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H3	12	H3-12-*	-1	TRVGEYDAWFAY	BBBBAAABBLAB
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H4	8	H4-8-1	11	RDNARNTL	BBAAALBB
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-1	8	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L2	8	L2-8-*	-1	GGTKNRAP	BLLABBBA
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-3	20	ALWYSNHWV	BBBBAABBB
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	26	LIGDKA	BBEABB
L	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	92.3	H1	13	H1-13-*	-1	AASGFTFSSYDMS	BBBLBBBLABBBB
L	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H2	10	H2-10-*	-1	YISSGGDYIY	BBBLALABBB
L	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H3	12	H3-12-*	-1	TRVGEYDAWFAY	BBBBAAABBBAB
L	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H4	8	H4-8-1	11	RDNARNTL	BBAAALBB
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-1	9	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L2	8	L2-8-*	-1	GGTKNRAP	BLLABBBA
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-3	19	ALWYSNHWV	BBBBAABBB
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	26	LIGDKA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022