PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6N4R

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	83.3	L1	12	L1-12-*	-1	SVSLSISsSNLF	BBABBBBAABBB
I	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	87.5	L2	8	L2-8-1	25	YGTSKLAS	BLLABBBB
I	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	62.5	L3	9	L3-9-3	23	QQWSSHSFT	BBBBAABBB
I	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	100.0	L4	6	L4-6-1	17	GSGTSY	EBEABB
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	92.3	H1	13	H1-13-*	-1	AASGFTFSNYAMS	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	80.0	H2	10	H2-10-2	21	TISNGGRYTY	BBBAALABBB
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	100.0	H3	15	H3-15-*	-1	ARHLYRYdVGGALDY
J	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	14	RDNAKNSL	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	83.3	L1	12	L1-12-*	-1	SVSLSISsSNLF	BBABBBBAABBB
K	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	87.5	L2	8	L2-8-1	25	YGTSKLAS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	62.5	L3	9	L3-9-3	23	QQWSSHSFT	BBBBAABBB
K	kappa	Mus.musculus	Mo_IGKV4-53*01	100.0	Mo_IGKV4-53*01	100.0	L4	6	L4-6-1	17	GSGTSY	EBEABB
L	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	92.3	H1	13	H1-13-*	-1	AASGFTFSNYAMS	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	80.0	H2	10	H2-10-2	21	TISNGGRYTY	BBBAALABBB
L	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	100.0	H3	15	H3-15-*	-1	ARHLYRYdVGGALDY
L	heavy	Mus.musculus	Mo_IGHV5-9-3*01	98.6	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	14	RDNAKNSL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022