PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6MZJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-1	16	RASQSVSSYLA	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	22	YDASNRAT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	10	QQYEF	BBEAB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	11	KASGYTFTGYYMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	11	WINPNSGGTN	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABAABAABBAB
D	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	12	RDTSISTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	11	KASGYTFTGYYMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	11	WINPNSGGTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABAABAABBAB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	98.6	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	12	RDTSISTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-1	16	RASQSVSSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	22	YDASNRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	10	QQYEF	BBEAB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022