PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6MFP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	92.3	H1	13	H1-13-1	11	KASGYTFASYDIN	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	80.0	H2	10	H2-10-1	14	WMNPKTGNTG	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	50.0	H3	16	H3-16-*	-1	ATYRIiaAVGYRYFQY
C	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	100.0	H4	8	H4-8-1	14	RNTSISTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	81.8	L1	11	L1-11-2	17	RASQGFGNYLA	BBABBALLBBB
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	87.5	L2	8	L2-8-1	13	YAATTLQS	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	100.0	L3	9	L3-9-cis7-1	27	QKYNSAPFT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	92.3	H1	13	H1-13-1	15	KASGYTFASYDIN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	80.0	H2	10	H2-10-1	11	WMNPKTGNTG	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	50.0	H3	16	H3-16-*	-1	ATYRIiaAVGYRYFQY
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	95.9	Hu_IGHV1-8*03	100.0	H4	8	H4-8-1	12	RNTSISTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	81.8	L1	11	L1-11-2	20	RASQGFGNYLA	BBABBALLBBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	87.5	L2	8	L2-8-1	10	YAATTLQS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	100.0	L3	9	L3-9-cis7-1	26	QKYNSAPFT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	92.8	Hu_IGKV1-27*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022