PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6M87

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	16	SASSSVSYVH	BBABBBABBB
A	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	12	YDTSKLAS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	62.5	L3	9	L3-9-cis7-1	13	HQWRTNPPT	BBBABBbBB
A	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H1	13	H1-13-1	10	KASGYSFTDYNMN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	80.0	H2	10	H2-10-1	6	VINPNSGTTN	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H3	12	H3-12-*	-1	ARGGGFRRGFDS	BBBAEBLAEBAB
B	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	9	VDQSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	16	SASSSVSYVH	BBABBBABBB
C	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	12	YDTSKLAS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	62.5	L3	9	L3-9-cis7-1	13	HQWRTNPPT	BBBABBbBB
C	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H1	13	H1-13-1	11	KASGYSFTDYNMN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	80.0	H2	10	H2-10-1	6	VINPNSGTTN	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H3	12	H3-12-*	-1	ARGGGFRRGFDS	BBBAEBLAEBAB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	9	VDQSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	16	SASSSVSYVH	BBABBBABBB
E	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	12	YDTSKLAS	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	62.5	L3	9	L3-9-cis7-1	13	HQWRTNPPT	BBBABBbBB
E	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H1	13	H1-13-1	10	KASGYSFTDYNMN	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	80.0	H2	10	H2-10-1	6	VINPNSGTTN	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H3	12	H3-12-*	-1	ARGGGFRRGFDS	BBBAEBLAEBAB
F	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	8	VDQSSSTA	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	16	SASSSVSYVH	BBABBBABBB
G	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	12	YDTSKLAS	BLEABBBB
G	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	62.5	L3	9	L3-9-cis7-1	13	HQWRTNPPT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H1	13	H1-13-1	11	KASGYSFTDYNMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	80.0	H2	10	H2-10-1	6	VINPNSGTTN	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H3	12	H3-12-*	-1	ARGGGFRRGFDS	BBBAEBLAEBAB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	9	VDQSSSTA	BBAAALBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	16	SASSSVSYVH	BBABBBABBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	12	YDTSKLAS	BLEABBBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	62.5	L3	9	L3-9-cis7-1	13	HQWRTNPPT	BBAABBbBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
J	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H1	13	H1-13-1	10	KASGYSFTDYNMN	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	80.0	H2	10	H2-10-1	6	VINPNSGTTN	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H3	12	H3-12-*	-1	ARGGGFRRGFDS	BBBAEBLAEBAB
J	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	9	VDQSSSTA	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	16	SASSSVSYVH	BBABBBABBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	12	YDTSKLAS	BLEABBBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	62.5	L3	9	L3-9-cis7-1	13	HQWRTNPPT	BBBABBbBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	98.5	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
L	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H1	13	H1-13-1	11	KASGYSFTDYNMN	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	80.0	H2	10	H2-10-1	7	VINPNSGTTN	BBBAAALBBB
L	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H3	12	H3-12-*	-1	ARGGGFRRGFDS	BBBAEBLAEBAB
L	heavy	Mus.musculus	Mo_IGHV1-39*01	94.5	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	8	VDQSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022