PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6M3C

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	CDRLenMismatch	-1.0	L1	15	L1-15-1	17	KASESVDSfgatFMH	BBABBABBLLBBABB
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	62.5	L2	8	L2-8-*	-1	YLASNLES	BLLABBBA
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-*	-1	QQNNEDPYT	BBAABBbAE
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	29	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	69.2	H1	13	H1-13-1	16	AASGFTFSNYYLN	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	33.3	H2	12	H2-12-*	-1	DIRlkSNNYEKH	BBBBAAALLBBA
F	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H3	9	H3-9-*	-1	AREGDYFDY	BBBLaBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H4	8	H4-8-1	26	RDDSKNSL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	69.2	H1	13	H1-13-1	16	AASGFTFSNYYLN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	33.3	H2	12	H2-12-*	-1	DIRlkSNNYEKH	BBBBAAALLBBA
H	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H3	9	H3-9-*	-1	AREGDYFDY	BBBLaBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H4	8	H4-8-1	26	RDDSKNSL	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	CDRLenMismatch	-1.0	L1	15	L1-15-1	17	KASESVDSfgatFMH	BBABBABBLLBBABB
J	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	62.5	L2	8	L2-8-*	-1	YLASNLES	BLLABBBA
J	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-*	-1	QQNNEDPYT	BBAABBbAE
J	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	29	GSGTDF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	69.2	H1	13	H1-13-1	16	AASGFTFSNYYLN	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	33.3	H2	12	H2-12-*	-1	DIRlkSNNYEKH	BBBBAAALLBBA
K	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H3	9	H3-9-*	-1	AREGDYFDY	BBBLaBBAB
K	heavy	Homo.sapiens	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H4	8	H4-8-1	26	RDDSKNSL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	CDRLenMismatch	-1.0	L1	15	L1-15-1	17	KASESVDSfgatFMH	BBABBABBLLBBABB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	62.5	L2	8	L2-8-*	-1	YLASNLES	BLLABBBA
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	42.9	L3	9	L3-9-cis7-*	-1	QQNNEDPYT	BBAABBbAE
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	81.2	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	29	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022