PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6KS2

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	13	KSSQSLfnsrtrKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	87.5	L2	8	L2-8-1	10	YWASTRKS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	83.3	L3	8	L3-8-*	-1	KQSYYLRT	BBAABEBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	100.0	H1	13	H1-13-1	8	KASGYTFTDYEMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	80.0	H2	10	H2-10-1	9	AIDPETGGTV	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	0.0	H3	11	H3-11-*	-1	ISEDIDESKDY	BBBBABAABBB
B	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	75.0	H4	8	H4-8-1	8	ADISSTTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	8	KSSQSLfnsrtrKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	87.5	L2	8	L2-8-1	7	YWASTRKS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	83.3	L3	8	L3-8-1	15	KQSYYLRT	BBAABEBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	100.0	H1	13	H1-13-1	8	KASGYTFTDYEMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	80.0	H2	10	H2-10-1	7	AIDPETGGTV	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	0.0	H3	11	H3-11-*	-1	ISEDIDESKDY	BBBBABAABBB
D	heavy	Mus.musculus	Mo_IGHV1-23*01	93.2	Mo_IGHV1-23*01	75.0	H4	8	H4-8-1	7	ADISSTTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022