PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6GFF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
K	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	90.9	L1	11	L1-11-2	16	KASDHIKNWLA	BBABBALLBBB
K	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	87.5	L2	8	L2-8-4	21	SGATSLEA	BEAABBBB
K	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	100.0	L3	9	L3-9-cis7-1	11	QQYWSTPWT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	66.7	L4	6	L4-6-1	15	GSGKNF	EBEABB
L	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	92.3	H1	13	H1-13-1	14	TVSGFSLTGYGIN	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	9	MIWSDGSTD	BBBAALBBB
L	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	100.0	H3	15	H3-15-*	-1	ARDRNYYdYDGAMDY
L	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	87.5	H4	8	H4-8-1	8	KDNSNSQV	BBAAALBB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	90.9	L1	11	L1-11-2	17	KASDHIKNWLA	BBABBALLBBB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	87.5	L2	8	L2-8-4	18	SGATSLEA	BEAABBBB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	100.0	L3	9	L3-9-cis7-1	9	QQYWSTPWT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV13-85*01	91.3	Mo_IGKV13-85*01	66.7	L4	6	L4-6-1	20	GSGKNF	EBEABB
N	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	92.3	H1	13	H1-13-1	16	TVSGFSLTGYGIN	BBBLBBAAABBBB
N	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	9	MIWSDGSTD	BBBAALBBB
N	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	100.0	H3	15	H3-15-*	-1	ARDRNYYdYDGAMDY
N	heavy	Mus.musculus	Mo_IGHV2-6-7*01	93.2	Mo_IGHV2-6-7*01	87.5	H4	8	H4-8-1	8	KDNSNSQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022