PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6FOE

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	11	AASGFTFSIYSMN	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	60.0	H2	10	H2-10-*	-1	SIGSSGGTTY	BBBAAELBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	11	H3-11-*	-1	AGSQWLYGMDV	BBBBEAAEBAB
A	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	11	RSSQRIMTYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	10	FVASHSQS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	10	QQSFWTPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	11	GSETDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	10	AASGFTFSIYSMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	60.0	H2	10	H2-10-1	25	SIGSSGGTTY	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	11	H3-11-*	-1	AGSQWLYGMDV	BBBBEABBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	63.6	L1	11	L1-11-1	12	RSSQRIMTYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	9	FVASHSQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	15	QQSFWTPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	10	GSETDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022