PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6EV1

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H1	13	H1-13-1	10	KASGYTFTSYWMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	6	YINPSTGYTE	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	50.0	H3	10	H3-10-*	-1	APLWPLGTDY	BBABbBLBAB
A	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	5	ADKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	8	SASSSVSYMH	BBABBBABBB
B	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	10	YDTSKLAS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L3	9	L3-9-cis7-1	20	QQWSSNPPT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
C	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H1	13	H1-13-1	10	KASGYTFTSYWMH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	6	YINPSTGYTE	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	50.0	H3	10	H3-10-*	-1	APLWPLGTDY	BBABbBLBAB
C	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	8	SASSSVSYMH	BBABBBABBB
D	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	10	YDTSKLAS	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L3	9	L3-9-cis7-1	21	QQWSSNPPT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	8	GSGTSY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H1	13	H1-13-1	10	KASGYTFTSYWMH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	7	YINPSTGYTE	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	50.0	H3	10	H3-10-*	-1	APLWPLGTDY	BBABbBLBAB
E	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	15	ADKSSSTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	8	SASSSVSYMH	BBABBBABBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	10	YDTSKLAS	BLEABBBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L3	9	L3-9-cis7-1	20	QQWSSNPPT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	8	GSGTSY	EBEABB
G	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H1	13	H1-13-1	10	KASGYTFTSYWMH	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	6	YINPSTGYTE	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	50.0	H3	10	H3-10-*	-1	APLWPLGTDY	BBABbBLBAB
G	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	8	SASSSVSYMH	BBABBBABBB
H	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	10	YDTSKLAS	BLEABBBB
H	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L3	9	L3-9-cis7-1	20	QQWSSNPPT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	8	GSGTSY	EBEABB
I	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H1	13	H1-13-1	11	KASGYTFTSYWMH	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	6	YINPSTGYTE	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	50.0	H3	10	H3-10-*	-1	APLWPLGTDY	BBAEbBLALB
I	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H4	8	H4-8-*	-1	adkssstA
J	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	9	SASSSVSYMH	BBABBBABBB
J	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	10	YDTSKLAS	BLEABBBB
J	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L3	9	L3-9-cis7-1	20	QQWSSNPPT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
K	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H1	13	H1-13-1	10	KASGYTFTSYWMH	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	7	YINPSTGYTE	BBBAAALBBB
K	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	50.0	H3	10	H3-10-*	-1	APLWPLGTDY	BBABbBLBAB
K	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	8	SASSSVSYMH	BBABBBABBB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L2	8	L2-8-1	10	YDTSKLAS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L3	9	L3-9-cis7-1	20	QQWSSNPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	98.6	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022