PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6EQC

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Mo_IGHV2-5*01	76.9	H1	13	H1-13-1	15	KVSGFSLGRYGVH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Mo_IGHV2-5*01	88.9	H2	9	H2-9-1	11	VIWRGGTTD	BBBAALBBB
D	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Hu_IGHV1-46*02	100.0	H3	11	H3-11-*	-1	ARQGSNFPLAY	BBBBAABBBAB
D	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Hu_IGHV1-46*02	62.5	H4	8	H4-8-1	10	KDDSKSTV	BBAAALBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Mo_IGKV6-32*01	81.8	L1	11	L1-11-1	7	KASQSVTNDAA	BBABBAEABBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Mo_IGKV6-32*01	75.0	L2	8	L2-8-1	17	YQASTRYT	BLLABBBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	13	HQDYSSPLT	BBAABBbBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	10	GYGTDF	EBEABB
E	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Mo_IGHV2-5*01	76.9	H1	13	H1-13-1	12	KVSGFSLGRYGVH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Mo_IGHV2-5*01	88.9	H2	9	H2-9-1	12	VIWRGGTTD	BBBAALBBB
E	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Hu_IGHV1-46*02	100.0	H3	11	H3-11-*	-1	ARQGSNFPLAY	BBBBALBBBAB
E	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Hu_IGHV1-46*02	62.5	H4	8	H4-8-1	10	KDDSKSTV	BBAAALBB
E	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Mo_IGKV6-32*01	81.8	L1	11	L1-11-1	13	KASQSVTNDAA	BBABBAEABBB
E	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Mo_IGKV6-32*01	75.0	L2	8	L2-8-1	19	YQASTRYT	BLLABBBB
E	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	17	HQDYSSPLT	BBAABBbBB
E	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	9	GYGTDF	EBEABB
F	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Mo_IGHV2-5*01	76.9	H1	13	H1-13-1	14	KVSGFSLGRYGVH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Mo_IGHV2-5*01	88.9	H2	9	H2-9-1	12	VIWRGGTTD	BBBAALBBB
F	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Hu_IGHV1-46*02	100.0	H3	11	H3-11-*	-1	ARQGSNFPLAY	BBBBAABBBAB
F	heavy	Mus.musculus	Hu_IGHV1-46*02	90.4	Hu_IGHV1-46*02	62.5	H4	8	H4-8-1	6	KDDSKSTV	BBAAALBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Mo_IGKV6-32*01	81.8	L1	11	L1-11-1	12	KASQSVTNDAA	BBABBAEABBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Mo_IGKV6-32*01	75.0	L2	8	L2-8-1	10	YQASTRYT	BLLABBBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	17	HQDYSSPLT	BBAABBbBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	12	GYGTDF	EBEABB

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