PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6EMJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Mo_IGHV4-1*02	92.3	H1	13	H1-13-1	9	ATSGFDFSRYWMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Mo_IGHV4-1*02	70.0	H2	10	H2-10-2	12	EVNPDSTSIN	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Hu_IGHV3-OR16-13*01	100.0	H3	17	H3-17-*	-1	TRPNYYgsryhyYAMDY
A	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Hu_IGHV3-OR16-13*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Mo_IGKV10-94*03	90.9	L1	11	L1-11-1	6	RASQDINNYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Mo_IGKV10-94*03	100.0	L2	8	L2-8-1	5	YYTSRLHS	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	57.1	L3	9	L3-9-cis7-1	6	QQGSTLPFT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Mo_IGHV4-1*02	92.3	H1	13	H1-13-1	10	ATSGFDFSRYWMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Mo_IGHV4-1*02	70.0	H2	10	H2-10-2	14	EVNPDSTSIN	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Hu_IGHV3-OR16-13*01	100.0	H3	17	H3-17-*	-1	TRPNYYgsrYHYYAMDY
H	heavy	Homo.sapiens	Hu_IGHV3-OR16-13*01	90.4	Hu_IGHV3-OR16-13*01	100.0	H4	8	H4-8-1	4	RDNAKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Mo_IGKV10-94*03	90.9	L1	11	L1-11-1	8	RASQDINNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Mo_IGKV10-94*03	100.0	L2	8	L2-8-1	5	YYTSRLHS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	57.1	L3	9	L3-9-cis7-1	8	QQGSTLPFT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022