PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6EJM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	84.6	H1	13	H1-13-1	13	AASGFTFRSYIMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	100.0	H2	10	H2-10-2	9	TISGGGGNTY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	50.0	H3	9	H3-9-*	-1	ASLTAVGDY	BBAABABBB
H	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	81.2	L1	16	L1-16-1	16	KSSQSLfdtdgKTYLT	BBABBABBAALBBBBB
H	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	87.5	L2	8	L2-8-1	12	YLVSKLAS	BLEABBBB
H	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	85.7	L3	9	L3-9-cis7-1	8	LQGTHFPLT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
I	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	84.6	H1	13	H1-13-1	12	AASGFTFRSYIMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	100.0	H2	10	H2-10-2	8	TISGGGGNTY	BBBAALABBB
I	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	50.0	H3	9	H3-9-*	-1	ASLTAVGDY	BBAABABBB
I	heavy	Mus.musculus	Mo_IGHV5-9*01	97.3	Mo_IGHV5-9*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	81.2	L1	16	L1-16-1	15	KSSQSLfdtdgKTYLT	BBABBABBAALBBBBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	87.5	L2	8	L2-8-1	11	YLVSKLAS	BLEABBBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	85.7	L3	9	L3-9-cis7-1	10	LQGTHFPLT	BBAABBbBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022