PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6E5P

#CDRs = 8; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
1	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	27	RASQSIETWLA	BBAEBAEAABB
1	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	15	YKASTLKT	BLLABBBB
1	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-*	-1	QHYAGYSAT	BBBBAABEB
1	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	33	GSGTEF	EEEABB
2	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-*	-1	GVSNFRISAHTMN	BBBLBBAAABBBB
2	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-*	-1	SISTSSTYRD	BBBBLLABBB
2	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
2	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	24	RDDLEDFV	BBAAALBB
3	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-*	-1	GVSNFRISAHTMN	BBBLBBAAABBBB
3	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	18	SISTSSTYRD	BBBBLLABBB
3	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
3	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	16	RDDLEDFV	BBAAALBB
4	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBEBBAEABBB
4	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	15	YKASTLKT	BLLABBBB
4	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-4	27	QHYAGYSAT	BBBAEAEBB
4	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	15	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-*	-1	GVSNFRISAHTMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	18	SISTSSTYRD	BBBBLLABBB
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
H	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	16	RDDLEDFV	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	53.8	H1	13	H1-13-1	7	RASGYNFRDYSIH	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	30.0	H2	10	H2-10-1	9	WIKPLWGAVS	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	0.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
I	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	12.5	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
J	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	CDRLenMismatch	-1.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
J	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	62.5	L2	8	L2-8-1	6	YDTSRRAS	BLLABBBB
J	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	0.0	L3	5	L3-5-1	8	QQFEF	BBEAB
J	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	27	RASQSIETWLA	BBAEBAEAABB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	15	YKASTLKT	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-*	-1	QHYAGYSAT	BBBBAABEB
K	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	33	GSGTEF	EEEABB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBEBBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	15	YKASTLKT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-4	27	QHYAGYSAT	BBBAEAEBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	15	GSGTEF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-*	-1	GVSNFRISAHTMN	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-*	-1	SISTSSTYRD	BBBBLLABBB
M	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
M	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	24	RDDLEDFV	BBAAALBB
O	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	53.8	H1	13	H1-13-1	7	RASGYNFRDYSIH	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	30.0	H2	10	H2-10-1	9	WIKPLWGAVS	BBBAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	0.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
O	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	12.5	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
P	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	CDRLenMismatch	-1.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
P	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	62.5	L2	8	L2-8-1	6	YDTSRRAS	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	0.0	L3	5	L3-5-1	8	QQFEF	BBEAB
P	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-1	27	RASQSIETWLA	BBAEBAEAABB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	15	YKASTLKT	BLLABBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-*	-1	QHYAGYSAT	BBBBAABEB
Q	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	33	GSGTEF	EEEABB
R	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-*	-1	GVSNFRISAHTMN	BBBLBBAAABBBB
R	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-*	-1	SISTSSTYRD	BBBBLLABBB
R	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
R	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	24	RDDLEDFV	BBAAALBB
S	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	38.5	H1	13	H1-13-*	-1	GVSNFRISAHTMN	BBBLBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	60.0	H2	10	H2-10-4	18	SISTSSTYRD	BBBBLLABBB
S	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	100.0	H3	16	H3-16-*	-1	ARKGSDrlSDNDPFDA
S	heavy	Homo.sapiens	Hu_IGHV3-21*01	74.0	Hu_IGHV3-21*01	25.0	H4	8	H4-8-1	16	RDDLEDFV	BBAAALBB
T	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	81.8	L1	11	L1-11-*	-1	RASQSIETWLA	BBEBBAEABBB
T	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	15	YKASTLKT	BLLABBBB
T	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	57.1	L3	9	L3-9-4	27	QHYAGYSAT	BBBAEAEBB
T	kappa	Homo.sapiens	Hu_IGKV1-5*03	89.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	15	GSGTEF	EBEABB
V	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	53.8	H1	13	H1-13-1	7	RASGYNFRDYSIH	BBBLBBAAABBBB
V	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	30.0	H2	10	H2-10-1	9	WIKPLWGAVS	BBBAAALBBB
V	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	0.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
V	heavy	Homo.sapiens	Hu_IGHV1-18*02	71.1	Hu_IGHV1-18*02	12.5	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	CDRLenMismatch	-1.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	62.5	L2	8	L2-8-1	6	YDTSRRAS	BLLABBBB
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	0.0	L3	5	L3-5-1	8	QQFEF	BBEAB
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

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