PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6DKJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	92.3	H1	13	H1-13-1	9	AASGFTFSNYGMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	60.0	H2	10	H2-10-2	14	AIWFDASDKY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H3	13	H3-13-*	-1	ARDQAIFGVVPDY	BBBABAALABBAB
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	100.0	L1	11	L1-11-1	4	RASQSVSSNLA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	87.5	L2	8	L2-8-1	7	YGAATRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	100.0	L3	9	L3-9-cis7-1	9	QQYNNWPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	92.3	H1	13	H1-13-1	10	AASGFTFSNYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	60.0	H2	10	H2-10-2	15	AIWFDASDKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H3	13	H3-13-*	-1	ARDQAIFGVVPDY	BBBABAALABBAB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	100.0	L1	11	L1-11-1	4	RASQSVSSNLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	87.5	L2	8	L2-8-1	9	YGAATRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	100.0	L3	9	L3-9-cis7-1	8	QQYNNWPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	98.6	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	5	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022