PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6DCA

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	84.6	H1	13	H1-13-*	-1	KTSEYTFTEYTKH	BBABAAAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	13	SINPNNGDTY	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	0.0	H3	10	H3-10-*	-1	AMGDSAWFAY	BBBEAABLAB
H	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	87.5	H4	8	H4-8-*	-1	VDKSSTTA	BBAALABB
I	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	84.6	H1	13	H1-13-*	-1	KTSEYTFTEYTKH	BBABAAAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	10	SINPNNGDTY	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	0.0	H3	10	H3-10-*	-1	AMGDSAWFAY	BBBEAABLAB
I	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	87.5	H4	8	H4-8-*	-1	VDKSSTTA	BBAALABB
J	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	84.6	H1	13	H1-13-*	-1	KTSEYTFTEYTKH	BBABAAAAABBBB
J	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	14	SINPNNGDTY	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	0.0	H3	10	H3-10-*	-1	AMGDSAWFAY	BBBEAABLAB
J	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	87.5	H4	8	H4-8-*	-1	VDKSSTTA	BBAALABB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	84.6	H1	13	H1-13-*	-1	KTSEYTFTEYTKH	BBABAAAAABBBB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	11	SINPNNGDTY	BBBAAALBBB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	0.0	H3	10	H3-10-*	-1	AMGDSAWFAY	BBBEABBLAB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	93.3	Mo_IGHV1S113*01	87.5	H4	8	H4-8-*	-1	VDKSSTTA	BBAALABB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	11	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	BLLABBBA
L	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	85.7	L3	9	L3-9-cis7-1	15	VQGTHSPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	10	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	BLLABBBA
M	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	85.7	L3	9	L3-9-cis7-1	12	VQGTHSPLT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
N	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	8	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
N	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	BLLABBBA
N	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	85.7	L3	9	L3-9-cis7-1	12	VQGTHSPLT	BBAABBbBB
N	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
O	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	10	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
O	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	BLEABBBA
O	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	85.7	L3	9	L3-9-cis7-1	10	VQGTHSPLT	BBAABBbBB
O	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022