PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6CXC

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
G	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	84.6	H1	13	H1-13-*	-1	KASGYAFSNSWMS	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	50.0	H2	10	H2-10-3	23	RLFPADGDIT	BBBBLALBBB
G	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	100.0	H3	9	H3-9-*	-1	ARMDNSEVF	BBBBAABAB
G	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	87.5	H4	8	H4-8-1	16	ADKSSNTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	84.6	H1	13	H1-13-*	-1	KASGYAFSNSWMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	50.0	H2	10	H2-10-3	23	RLFPADGDIT	BBBBLALBBB
I	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	100.0	H3	9	H3-9-*	-1	ARMDNSEVF	BBBBAABAB
I	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	87.5	H4	8	H4-8-1	16	ADKSSNTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	81.8	L1	11	L1-11-2	17	KASQNVRTGVS	BBABBALLBBB
J	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	21	YLASNRHT	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	71.4	L3	9	L3-9-cis7-1	17	LQHWTVPYT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	100.0	L4	6	L4-6-3	40	GSGTDF	EABABB
K	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	81.8	L1	11	L1-11-2	17	KASQNVRTGVS	BBABBALLBBB
K	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	21	YLASNRHT	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	71.4	L3	9	L3-9-cis7-1	17	LQHWTVPYT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	100.0	L4	6	L4-6-3	40	GSGTDF	EABABB
X	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	84.6	H1	13	H1-13-*	-1	KASGYAFSNSWMS	BBBLBBAAABBBB
X	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	50.0	H2	10	H2-10-3	23	RLFPADGDIT	BBBBLALBBB
X	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	100.0	H3	9	H3-9-*	-1	ARMDNSEVF	BBBBAABAB
X	heavy	Mus.musculus	Mo_IGHV1-82*01	91.8	Mo_IGHV1-82*01	87.5	H4	8	H4-8-1	16	ADKSSNTA	BBAAALBB
Y	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	81.8	L1	11	L1-11-2	17	KASQNVRTGVS	BBABBALLBBB
Y	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	21	YLASNRHT	BLLABBBB
Y	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	71.4	L3	9	L3-9-cis7-1	17	LQHWTVPYT	BBAABBbBB
Y	kappa	Mus.musculus	Mo_IGKV6-14*01	92.8	Mo_IGKV6-14*01	100.0	L4	6	L4-6-3	40	GSGTDF	EABABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022