PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6CNJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L1	16	L1-16-1	15	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	BLAABBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	16	FQGSHVPWT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-3	18	GSGTDF	EBAABB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	18	KGTGYTFSSYWIE	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	100.0	H2	10	H2-10-*	-1	EILPGSGSTN	BBBAABABBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	100.0	H3	12	H3-12-*	-1	ARYLPYYYAMDY	BBBBBLBBBLAB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	75.0	H4	8	H4-8-*	-1	ADKSSKTA	BBAABBBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L1	16	L1-16-1	14	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	BLAABBBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	15	FQGSHVPWT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-3	19	GSGTDF	EBAABB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	17	KGTGYTFSSYWIE	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	100.0	H2	10	H2-10-*	-1	EILPGSGSTN	BBBAABABBB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	100.0	H3	12	H3-12-*	-1	ARYLPYYYAMDY	BBBBBLBBBLAB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	75.0	H4	8	H4-8-*	-1	ADKSSKTA	BBAABBBB
J	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L1	16	L1-16-1	13	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
J	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	BLAABBBB
J	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	13	FQGSHVPWT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-3	19	GSGTDF	EBAABB
K	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	16	KGTGYTFSSYWIE	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	100.0	H2	10	H2-10-*	-1	EILPGSGSTN	BBBAABABBB
K	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	100.0	H3	12	H3-12-*	-1	ARYLPYYYAMDY	BBBBBLBBBLAB
K	heavy	Mus.musculus	Mo_IGHV1-9*01	89.0	Mo_IGHV1-9*01	75.0	H4	8	H4-8-*	-1	ADKSSKTA	BBAABBBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022