PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6CM3

#CDRs = 8; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	81.8	L1	11	L1-11-*	-1	RASESVSSDLA	BBABBALABBB
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	100.0	L2	8	L2-8-1	27	YGASTRAT	BLLABBBB
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	100.0	L3	11	L3-11-*	-1	QQYNNWPprYT	BBAABBbBBBB
J	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	13	GSGAEF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	53.8	H1	13	H1-13-*	-1	KASGDTFIRYSFT	BBBEBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	60.0	H2	10	H2-10-1	20	RIITILDVAH	BBBAAALBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	50.0	H3	21	H3-21-*	-1	AgvyegeaDEGEYDNNGFLKH
K	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	87.5	H4	8	H4-8-1	16	ADKSTSTV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	81.8	L1	11	L1-11-*	-1	RASESVSSDLA	BBABBALABBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	100.0	L2	8	L2-8-1	27	YGASTRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	100.0	L3	11	L3-11-*	-1	QQYNNWPprYT	BBAABBbBBBB
L	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	13	GSGAEF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	53.8	H1	13	H1-13-*	-1	KASGDTFIRYSFT	BBBEBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	60.0	H2	10	H2-10-1	20	RIITILDVAH	BBBAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	50.0	H3	21	H3-21-*	-1	AgvyegeaDEGEYDNNGFLKH
M	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	87.5	H4	8	H4-8-1	16	ADKSTSTV	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	81.8	L1	11	L1-11-*	-1	RASESVSSDLA	BBABBALABBB
N	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	100.0	L2	8	L2-8-1	27	YGASTRAT	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	100.0	L3	11	L3-11-*	-1	QQYNNWPprYT	BBAABBbBBBB
N	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	83.3	L4	6	L4-6-1	13	GSGAEF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	53.8	H1	13	H1-13-*	-1	KASGDTFIRYSFT	BBBEBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	60.0	H2	10	H2-10-1	20	RIITILDVAH	BBBAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	50.0	H3	21	H3-21-*	-1	AgvyegeaDEGEYDNNGFLKH
O	heavy	Homo.sapiens	Hu_IGHV1-69*08	84.9	Hu_IGHV1-69*08	87.5	H4	8	H4-8-1	16	ADKSTSTV	BBAAALBB
P	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	None	-1.0	H1	14	H1-14-*	-1	KAYGVnTFGLYAVN	BBBLBABAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	None	-1.0	H2	9	H2-9-*	-1	QIWRWKSSA
P	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	Hu_IGHV1-18*02	0.0	H3	22	H3-22-*	-1	TTTSTYDKWSglhhdgvmAFSS
P	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	Hu_IGHV1-18*02	0.0	H4	12	H4-12-*	-1	AVDltgsSPPIS
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	None	0.0	L1	12	L1-12-*	-1	RASQSITgNWVA	BBABBBBLLBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	None	25.0	L2	8	L2-8-*	-1	YRGAALLG	BLEABBBA
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	14	QQYDTYPGT	BBAABBbBB
Q	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	Hu_IGKV1-39*01	66.7	L4	6	L4-6-*	-1	AAGTDF	BAEABB
R	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	None	-1.0	H1	14	H1-14-*	-1	KAYGVnTFGLYAVN	BBBLBABAAABBBB
R	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	None	-1.0	H2	9	H2-9-*	-1	QIWRWKSSA
R	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	Hu_IGHV1-18*02	0.0	H3	22	H3-22-*	-1	TTTSTYDKWSglhhdgvmAFSS
R	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	Hu_IGHV1-18*02	0.0	H4	12	H4-12-*	-1	AVDltgsSPPIS
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	None	0.0	L1	12	L1-12-*	-1	RASQSITgNWVA	BBABBBBLLBBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	None	25.0	L2	8	L2-8-*	-1	YRGAALLG	BLEABBBA
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	14	QQYDTYPGT	BBAABBbBB
S	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	Hu_IGKV1-39*01	66.7	L4	6	L4-6-*	-1	AAGTDF	BAEABB
T	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	None	-1.0	H1	14	H1-14-*	-1	KAYGVnTFGLYAVN	BBBLBABAAABBBB
T	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	None	-1.0	H2	9	H2-9-*	-1	QIWRWKSSA
T	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	Hu_IGHV1-18*02	0.0	H3	22	H3-22-*	-1	TTTSTYDKWSglhhdgvmAFSS
T	heavy	Homo.sapiens	Hu_IGHV1-18*02	77.8	Hu_IGHV1-18*02	0.0	H4	12	H4-12-*	-1	AVDltgsSPPIS
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	None	0.0	L1	12	L1-12-*	-1	RASQSITgNWVA	BBABBBBLLBBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	None	25.0	L2	8	L2-8-*	-1	YRGAALLG	BLEABBBA
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	14	QQYDTYPGT	BBAABBbBB
U	kappa	Homo.sapiens	Hu_IGKV1-39*01	79.7	Hu_IGKV1-39*01	66.7	L4	6	L4-6-*	-1	AAGTDF	BAEABB

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